2008 · Nature Biotechnology
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
16,044 citationsRead
Most cited
1,486 papers in total2016 · Nature Methods
The Perseus computational platform for comprehensive analysis of (prote)omics data
9,167 citationsRead
1996 · Analytical Chemistry
Mass Spectrometric Sequencing of Proteins from Silver-Stained Polyacrylamide Gels
9,139 citationsRead
2009 · Nature Methods
Universal sample preparation method for proteome analysis
8,905 citationsRead
1989 · Science
Electrospray Ionization for Mass Spectrometry of Large Biomolecules
7,694 citationsRead
2003 · Nature
Mass spectrometry-based proteomics
6,916 citationsRead
Newest first
1,486 papers in total2025
- Mass-spectrometry-based proteomics: from single cells to clinical applicationsNature · 328 citations
2023
- Profiling the human intestinal environment under physiological conditionsNature · 489 citations
2022
- OpenCell: Endogenous tagging for the cartography of human cellular organizationScience · 645 citations
- Deep Visual Proteomics defines single-cell identity and heterogeneityNature Biotechnology · 589 citations
- Ultra‐high sensitivity mass spectrometry quantifies single‐cell proteome changes upon perturbationMolecular Systems Biology · 562 citations
- The emerging role of mass spectrometry-based proteomics in drug discoveryNature Reviews Drug Discovery · 365 citations
- Noninvasive proteomic biomarkers for alcohol-related liver diseaseNature Medicine · 337 citations
2021
- Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoVNature · 750 citations
- Artificial intelligence for proteomics and biomarker discoveryCell Systems · 407 citations
2020
- diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisitionNature Methods · 912 citations
- Pervasive functional translation of noncanonical human open reading framesScience · 716 citations
- Proteome profiling in cerebrospinal fluid reveals novel biomarkers of Alzheimer's diseaseMolecular Systems Biology · 324 citations
2019
- An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomicsNature Communications · 693 citations
- Proteomics reveals NNMT as a master metabolic regulator of cancer-associated fibroblastsNature · 536 citations
- Plasma Proteome Profiling to detect and avoid sample‐related biases in biomarker studiesEMBO Molecular Medicine · 382 citations
2018
- Online Parallel Accumulation–Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass SpectrometerMolecular & Cellular Proteomics · 1,082 citations
- A Novel LC System Embeds Analytes in Pre-formed Gradients for Rapid, Ultra-robust ProteomicsMolecular & Cellular Proteomics · 474 citations
- High-throughput and high-sensitivity phosphoproteomics with the EasyPhos platformNature Protocols · 397 citations
- BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutesNature Methods · 389 citations
2017
- Revisiting biomarker discovery by plasma proteomicsMolecular Systems Biology · 986 citations
- Systematic proteomic analysis of LRRK2-mediated Rab GTPase phosphorylation establishes a connection to ciliogenesiseLife · 530 citations
- Social network architecture of human immune cells unveiled by quantitative proteomicsNature Immunology · 426 citations
- Single Muscle Fiber Proteomics Reveals Fiber-Type-Specific Features of Human Muscle AgingCell Reports · 334 citations
2016
- Mass-spectrometric exploration of proteome structure and functionNature · 2,324 citations
- L-Arginine Modulates T Cell Metabolism and Enhances Survival and Anti-tumor ActivityCell · 1,796 citations
- Circular non-coding RNA ANRIL modulates ribosomal RNA maturation and atherosclerosis in humansNature Communications · 1,173 citations
- Phosphoproteomics reveals that Parkinson's disease kinase LRRK2 regulates a subset of Rab GTPaseseLife · 1,104 citations
- Plasma Proteome Profiling to Assess Human Health and DiseaseCell Systems · 807 citations
- Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometryNature Communications · 759 citations
- A genome-wide resource for the analysis of protein localisation in DrosophilaeLife · 422 citations
Research in numbers
From OpenAlex- article186
- review10
- preprint4
- Nature25
- Molecular & Cellular Proteomics23
- Cell21
- Science10
- Nature Methods9
- Jesper Velgaard Olsen25
- Jürgen Cox22
- Matthias S. Wilm14
- Jens Andersen13
- Jüergen Cox13
Experience and education
Universities
2003 to 2026University of Copenhagen
2025Université Paris-Sud
1998 to 2021University of North Carolina at Chapel Hill
2006Roskilde University
2006University of Minnesota
2006Tokyo Institute of Technology
Industry and labs
1997 to 2012Howard Hughes Medical Institute
2008European Bioinformatics Institute
1996 to 2002Centre National de la Recherche Scientifique
2000 to 2001Brigham and Women's Hospital